| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Banda Sea | Sea/Bay/Gulf | native | 846 |
| Camotes Sea | Sea/Bay/Gulf | native | 846 |
| Central Indo-Pacific | sea/bay/gulf | native | |
| Coral Sea and GBR | Sea/Bay/Gulf | native | 846 |
| Eastern Coral Triangle | sea/bay/gulf | native | 89710 |
| Eastern Philippines | Sea/Bay/Gulf | native | 846 |
| Great Barrier Reef | Sea/Bay/Gulf | native | 846 |
| Gulf of Thailand | Sea/Bay/Gulf | native | 846 |
| Indian Ocean | Sea/Bay/Gulf | native | 846 |
| Lesser Sunda | Sea/Bay/Gulf | native | 846 |
| Milne Bay | Sea/Bay/Gulf | native | 75728 |
| Pacific Ocean | Sea/Bay/Gulf | native | 846 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 846 |
| Solomon Archipelago | Sea/Bay/Gulf | native | 89710 |
| Solomon Sea | Sea/Bay/Gulf | native | 75728 |
| South China Sea | Sea/Bay/Gulf | native | 8294 |
| Sulu-Celebes Sea | Sea/Bay/Gulf | native | 846 |
| Sunda Shelf | sea/bay/gulf | native | 846 |
| Sunda Shelf/Java Sea | Sea/Bay/Gulf | native | 846 |
| Verde Island Passage | Sea/Bay/Gulf | native | 910 |
| Western Coral Triangle | sea/bay/gulf | native | 846 |