| Ecosystem | Type | Status | Ref. |
|---|---|---|---|
| Central Indo-Pacific | sea/bay/gulf | native | 75725 |
| Gulf of Oman | Sea/Bay/Gulf | native | 349 |
| Indian Ocean | Sea/Bay/Gulf | native | 349 |
| Indonesian Sea | Sea/Bay/Gulf | native | 75725 |
| Lesser Sunda | Sea/Bay/Gulf | native | 349 |
| Northeast Sulawesi | Sea/Bay/Gulf | native | 75725 |
| Pacific Ocean | Sea/Bay/Gulf | native | 349 |
| Palawan/North Borneo | Sea/Bay/Gulf | native | 121724 |
| Red Sea | Sea/Bay/Gulf | native | 349 |
| Red Sea and Gulf of Aden | sea/bay/gulf | native | 349 |
| Samar Sea | Sea/Bay/Gulf | native | 821 |
| South China Sea | Sea/Bay/Gulf | native | 349 |
| Sunda Shelf | sea/bay/gulf | native | 349 |
| Tubbataha Reefs | Sea/Bay/Gulf | native | 121724 |
| Western Coral Triangle | sea/bay/gulf | native | 75725 |
| Western Indo-Pacific | sea/bay/gulf | native | 349 |